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Crystal structure of G protein coupled receptor kinase 1 bound to ADP and magnesium chloride at 1.84A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C4W PDB ENTRY 3C4W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.25 293 PEG 6000, NaCl, glycerol, MES pH 6.25, ADP, magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.37 48.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.54 α = 90 b = 82.947 β = 93.01 c = 107.144 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97934 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 30 49154
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3C4W 1.84 19.47 49338 99.35 0.19275 0.19275 0.1984 0.1971 30.417
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.13 0.49 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.674 r_dihedral_angle_3_deg 13.59 r_dihedral_angle_4_deg 12.681 r_dihedral_angle_1_deg 5.368 r_scangle_it 4.32 r_scbond_it 3.261 r_mcangle_it 1.7 r_mcbond_it 1.368 r_angle_refined_deg 1.175 r_angle_other_deg 0.837
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.674 r_dihedral_angle_3_deg 13.59 r_dihedral_angle_4_deg 12.681 r_dihedral_angle_1_deg 5.368 r_scangle_it 4.32 r_scbond_it 3.261 r_mcangle_it 1.7 r_mcbond_it 1.368 r_angle_refined_deg 1.175 r_angle_other_deg 0.837 r_nbd_refined 0.204 r_symmetry_vdw_other 0.187 r_nbtor_refined 0.18 r_nbd_other 0.179 r_mcbond_other 0.173 r_symmetry_hbond_refined 0.164 r_xyhbond_nbd_refined 0.154 r_symmetry_vdw_refined 0.119 r_nbtor_other 0.083 r_chiral_restr 0.065 r_metal_ion_refined 0.034 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3962 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling