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Crystal Structure of Apo form of G protein coupled receptor kinase 1 at 7.51A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C4W PDB ENTRY 3C4W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 277 PEG 3350, NaCl, MES pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.44 64.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.313 α = 90 b = 123.313 β = 90 c = 192.517 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97967 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 7.5 50 2383
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3C4W 7.509 20 2230 99.73 0.18216 0.18216 0.182 194.421
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.05 -0.1 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.458 r_dihedral_angle_3_deg 17.607 r_dihedral_angle_4_deg 14 r_dihedral_angle_1_deg 6.729 r_angle_refined_deg 0.999 r_angle_other_deg 0.823 r_symmetry_vdw_other 0.261 r_scangle_it 0.198 r_nbd_refined 0.192 r_nbd_other 0.175
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.458 r_dihedral_angle_3_deg 17.607 r_dihedral_angle_4_deg 14 r_dihedral_angle_1_deg 6.729 r_angle_refined_deg 0.999 r_angle_other_deg 0.823 r_symmetry_vdw_other 0.261 r_scangle_it 0.198 r_nbd_refined 0.192 r_nbd_other 0.175 r_nbtor_refined 0.174 r_mcangle_it 0.147 r_xyhbond_nbd_refined 0.143 r_mcbond_it 0.142 r_scbond_it 0.136 r_symmetry_vdw_refined 0.12 r_nbtor_other 0.082 r_symmetry_hbond_refined 0.075 r_chiral_restr 0.055 r_xyhbond_nbd_other 0.018 r_mcbond_other 0.011 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7629 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling