3C4Y

Crystal Structure of Apo form of G protein coupled receptor kinase 1 at 7.51A


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3C4WPDB ENTRY 3C4W

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.4277PEG 3350, NaCl, MES pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.4464.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 123.313α = 90
b = 123.313β = 90
c = 192.517γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-08-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97967APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
17.5502383

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 3C4W7.50920223099.730.182160.18216194.421
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.1-0.05-0.10.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.458
r_dihedral_angle_3_deg17.607
r_dihedral_angle_4_deg14
r_dihedral_angle_1_deg6.729
r_angle_refined_deg0.999
r_angle_other_deg0.823
r_symmetry_vdw_other0.261
r_scangle_it0.198
r_nbd_refined0.192
r_nbd_other0.175
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.458
r_dihedral_angle_3_deg17.607
r_dihedral_angle_4_deg14
r_dihedral_angle_1_deg6.729
r_angle_refined_deg0.999
r_angle_other_deg0.823
r_symmetry_vdw_other0.261
r_scangle_it0.198
r_nbd_refined0.192
r_nbd_other0.175
r_nbtor_refined0.174
r_mcangle_it0.147
r_xyhbond_nbd_refined0.143
r_mcbond_it0.142
r_scbond_it0.136
r_symmetry_vdw_refined0.12
r_nbtor_other0.082
r_symmetry_hbond_refined0.075
r_chiral_restr0.055
r_xyhbond_nbd_other0.018
r_mcbond_other0.011
r_bond_refined_d0.007
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7629
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling