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Crystal Structure of G protein coupled receptor kinase 1 bound to ATP and magnesium chloride at 2.9A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C4W PDB ENTRY 3C4W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.3 277 PEG 3350, NaCl, glycerol, sodium citrate pH 4.3, ATP, magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.46 49.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.116 α = 90 b = 95.122 β = 90 c = 234.823 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97967 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 20 26629
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3C4W 2.9 19.75 26552 96.01 0.19307 0.19307 0.1954 0.2061 42.257
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.997 r_dihedral_angle_4_deg 17.148 r_dihedral_angle_3_deg 16.492 r_dihedral_angle_1_deg 5.404 r_scangle_it 3.289 r_scbond_it 2.37 r_mcangle_it 1.248 r_angle_refined_deg 1.228 r_mcbond_it 0.999 r_angle_other_deg 0.837
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.997 r_dihedral_angle_4_deg 17.148 r_dihedral_angle_3_deg 16.492 r_dihedral_angle_1_deg 5.404 r_scangle_it 3.289 r_scbond_it 2.37 r_mcangle_it 1.248 r_angle_refined_deg 1.228 r_mcbond_it 0.999 r_angle_other_deg 0.837 r_nbd_refined 0.223 r_symmetry_vdw_other 0.202 r_nbtor_refined 0.187 r_nbd_other 0.178 r_symmetry_hbond_refined 0.163 r_symmetry_vdw_refined 0.138 r_xyhbond_nbd_refined 0.137 r_mcbond_other 0.134 r_nbtor_other 0.085 r_chiral_restr 0.065 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7811 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling