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Crystal Structure of PFOMT, Phenylpropanoid and Flavonoid O-methyltransferase from M. crystallinum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 20% PEG 4000, 0.2M CaCl2, 100mM HEPES/NaOH, pH 7.0, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.11 41.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.89 α = 90 b = 71.83 β = 90 c = 128.12 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-05-20 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARRESEARCH 2004-05-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6 2 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 0.97905,0.9500 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.37 20 98.4 0.069 0.069 11.88 4.677 95653 94082 -3 19.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.37 1.45 94.7 0.397 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.371 19.27 94023 4041 100 0.189 0.187 0.1883 0.222 0.2229 RANDOM 18.399
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.31 -0.73 -1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.998 r_dihedral_angle_4_deg 17.254 r_dihedral_angle_3_deg 11.389 r_dihedral_angle_1_deg 5.353 r_sphericity_free 4.543 r_sphericity_bonded 4.513 r_scangle_it 2.363 r_mcangle_it 2.145 r_scbond_it 1.634 r_mcbond_it 1.455
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.998 r_dihedral_angle_4_deg 17.254 r_dihedral_angle_3_deg 11.389 r_dihedral_angle_1_deg 5.353 r_sphericity_free 4.543 r_sphericity_bonded 4.513 r_scangle_it 2.363 r_mcangle_it 2.145 r_scbond_it 1.634 r_mcbond_it 1.455 r_rigid_bond_restr 1.323 r_angle_refined_deg 1.26 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3577 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms 55
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction SHELXD phasing