☰ Navigation Tabs
Crystal structure of the N-terminal domain of response regulator receiver protein from Methanoculleus marisnigri JR1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 296 0.1M Bis-Tris pH 5.5, 2.0M Ammonium sulfate, 10% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.8 56.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.744 α = 90 b = 57.744 β = 90 c = 93.233 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 Mirrors 2007-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97930 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 100 0.075 6.5 5.8 20448 22.923
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 100 0.63 1.6 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 20 19747 654 99.88 0.16471 0.16378 0.1642 0.19318 0.1926 RANDOM 29.377
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.31 0.65 1.31 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.433 r_dihedral_angle_4_deg 17.535 r_dihedral_angle_3_deg 14.007 r_scangle_it 7.457 r_scbond_it 5.347 r_dihedral_angle_1_deg 5.323 r_mcangle_it 4.197 r_mcbond_it 3.335 r_angle_refined_deg 1.406 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.433 r_dihedral_angle_4_deg 17.535 r_dihedral_angle_3_deg 14.007 r_scangle_it 7.457 r_scbond_it 5.347 r_dihedral_angle_1_deg 5.323 r_mcangle_it 4.197 r_mcbond_it 3.335 r_angle_refined_deg 1.406 r_nbtor_refined 0.31 r_symmetry_hbond_refined 0.177 r_nbd_refined 0.175 r_xyhbond_nbd_refined 0.169 r_symmetry_vdw_refined 0.153 r_chiral_restr 0.097 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 978 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 12
Software Software Software Name Purpose SHELXD phasing SHELXE model building REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling