☰ Navigation Tabs
Crystal Structure of SYS-1 at 2.6A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 100 mM Hepes, 0.6 M Na/K Tartrate, 20 mM Glycine and 5mM DTT, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.19 70.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 203.5 α = 90 b = 95.048 β = 124.71 c = 149.39 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315 2006-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9796 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 97.5 0.065 10.5 3 70425 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 91.4 0.437 2.4 6527
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 49.57 72547 70332 3573 97.41 0.2466 0.247 0.245 0.286 0.288 RANDOM 60.547
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.73 0.12 0.34 1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.892 r_dihedral_angle_3_deg 17.85 r_dihedral_angle_4_deg 16.827 r_dihedral_angle_1_deg 5.003 r_scangle_it 2.964 r_scbond_it 1.843 r_mcangle_it 1.655 r_angle_refined_deg 1.14 r_mcbond_it 0.907 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.892 r_dihedral_angle_3_deg 17.85 r_dihedral_angle_4_deg 16.827 r_dihedral_angle_1_deg 5.003 r_scangle_it 2.964 r_scbond_it 1.843 r_mcangle_it 1.655 r_angle_refined_deg 1.14 r_mcbond_it 0.907 r_nbtor_refined 0.306 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.156 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.14 r_chiral_restr 0.088 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9770 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 37
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection