X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6298100 mM Hepes, 0.6 M Na/K Tartrate, 20 mM Glycine and 5mM DTT, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
4.1570.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.969α = 65.22
b = 85.343β = 78.08
c = 93.657γ = 83.02
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200CCDADSC QUANTUM 3152006-08-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.9792ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55093.7755167551621
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.52.5972.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.54875483376393.740.2180.2160.261RANDOM44.676
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.741.650.240.89-0.60.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.779
r_dihedral_angle_3_deg17.012
r_dihedral_angle_4_deg14.897
r_dihedral_angle_1_deg4.903
r_scangle_it3.744
r_scbond_it2.43
r_mcangle_it1.886
r_mcbond_it1.159
r_angle_refined_deg1.155
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.779
r_dihedral_angle_3_deg17.012
r_dihedral_angle_4_deg14.897
r_dihedral_angle_1_deg4.903
r_scangle_it3.744
r_scbond_it2.43
r_mcangle_it1.886
r_mcbond_it1.159
r_angle_refined_deg1.155
r_nbtor_refined0.306
r_nbd_refined0.206
r_symmetry_vdw_refined0.169
r_symmetry_hbond_refined0.158
r_xyhbond_nbd_refined0.138
r_chiral_restr0.089
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9885
Nucleic Acid Atoms
Solvent Atoms72
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection