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CASK CaM-Kinase Domain- AMPPNP complex, P1 form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A06 rat CamKI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 12.5%(v/v) ethylene glycol, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.45 49.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.387 α = 90 b = 59.675 β = 105.57 c = 61.086 γ = 105.63
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2004-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 96.9 0.108 14.5 2.1 30806 1 1 64.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 87 0.717 1.4 2.1 3312
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT rat CamKI 2.3 30 1 1 27922 1474 91.49 0.19058 0.18795 0.1869 0.23862 0.2386 RANDOM 51.677
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 -0.43 1.03 0.03 -0.04 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.669 r_dihedral_angle_4_deg 16.823 r_dihedral_angle_3_deg 16.664 r_dihedral_angle_1_deg 5.326 r_scangle_it 3.294 r_mcangle_it 2.978 r_scbond_it 2.429 r_mcbond_it 2.099 r_angle_refined_deg 1.137 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.669 r_dihedral_angle_4_deg 16.823 r_dihedral_angle_3_deg 16.664 r_dihedral_angle_1_deg 5.326 r_scangle_it 3.294 r_mcangle_it 2.978 r_scbond_it 2.429 r_mcbond_it 2.099 r_angle_refined_deg 1.137 r_nbtor_refined 0.298 r_nbd_refined 0.187 r_symmetry_vdw_refined 0.16 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.104 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4796 Nucleic Acid Atoms Solvent Atoms 258 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection DENZO data reduction SCALEPACK data scaling MOLREP phasing