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CASK CaM-Kinase Domain- 3'-AMP complex, P1 form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A06 rat CamKI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 12.5%(v/v) ethylene glycol, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.43 49.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.328 α = 90 b = 60.267 β = 106.49 c = 60.553 γ = 105.8
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2004-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 30 89.8 0.112 12.4 32667 1 1 48
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.3 76.7 0.427 1.5 4046
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT rat CamKI 2.19 20 1 1 30426 1576 86.34 0.21074 0.20754 0.26969 0.292 RANDOM 49.058
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.79 0.42 0.57 -1.04 0.06 -2.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.966 r_dihedral_angle_4_deg 20.818 r_dihedral_angle_3_deg 17.923 r_dihedral_angle_1_deg 5.275 r_scangle_it 4.282 r_mcangle_it 4.177 r_scbond_it 3.272 r_mcbond_it 3.036 r_angle_refined_deg 1.145 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.966 r_dihedral_angle_4_deg 20.818 r_dihedral_angle_3_deg 17.923 r_dihedral_angle_1_deg 5.275 r_scangle_it 4.282 r_mcangle_it 4.177 r_scbond_it 3.272 r_mcbond_it 3.036 r_angle_refined_deg 1.145 r_nbtor_refined 0.297 r_symmetry_hbond_refined 0.197 r_symmetry_vdw_refined 0.189 r_nbd_refined 0.188 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.081 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5010 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection DENZO data reduction SCALEPACK data scaling MOLREP phasing