☰ Navigation Tabs
Crystal structure of the mutated Y316D EscU C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.5 293 Li2SO4, Bis-Tris, Peg3350, NaCl, pH 5.5, Microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.92 36.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.882 α = 90 b = 58.832 β = 90 c = 72.186 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0000 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 97 0.042 13.3 6.6 37475 36351 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 77.7 0.35 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.2 45.6 37475 34527 1824 96.9 0.14404 0.14226 0.1509 0.17801 0.1803 RANDOM 12.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.19 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.492 r_dihedral_angle_4_deg 18.3 r_sphericity_free 17.384 r_dihedral_angle_3_deg 12.845 r_dihedral_angle_1_deg 8.914 r_scangle_it 7.857 r_sphericity_bonded 7.79 r_scbond_it 6.342 r_mcangle_it 3.94 r_mcbond_it 3.476
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.492 r_dihedral_angle_4_deg 18.3 r_sphericity_free 17.384 r_dihedral_angle_3_deg 12.845 r_dihedral_angle_1_deg 8.914 r_scangle_it 7.857 r_sphericity_bonded 7.79 r_scbond_it 6.342 r_mcangle_it 3.94 r_mcbond_it 3.476 r_rigid_bond_restr 3.2 r_angle_refined_deg 3.032 r_mcbond_other 1.543 r_angle_other_deg 1.337 r_symmetry_vdw_other 0.378 r_symmetry_vdw_refined 0.376 r_nbd_refined 0.274 r_nbd_other 0.188 r_nbtor_refined 0.185 r_symmetry_hbond_refined 0.171 r_chiral_restr 0.167 r_xyhbond_nbd_refined 0.16 r_nbtor_other 0.099 r_bond_refined_d 0.036 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 897 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing