☰ Navigation Tabs
Crystal structure of EscU C-terminal domain with N262D mutation, Space group P 41 21 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 293 HEPES, Jeffamine ED-2001, NaCl, Tris, pH 6.5, Microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 41.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.928 α = 90 b = 50.928 β = 90 c = 100.293 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.646 45.41 99.9 0.044 14.8 14.1 16688 16671 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.646 1.71 100 0.824 12.6 1612
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.646 16 16688 16599 839 99.51 0.211 0.211 0.21 0.2063 0.248 0.2437 RANDOM 11.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.09 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.506 r_dihedral_angle_3_deg 14.752 r_dihedral_angle_4_deg 7.784 r_dihedral_angle_1_deg 6.557 r_scangle_it 3.354 r_scbond_it 2.618 r_angle_refined_deg 1.772 r_angle_other_deg 1.502 r_mcangle_it 1.326 r_mcbond_it 1.184
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.506 r_dihedral_angle_3_deg 14.752 r_dihedral_angle_4_deg 7.784 r_dihedral_angle_1_deg 6.557 r_scangle_it 3.354 r_scbond_it 2.618 r_angle_refined_deg 1.772 r_angle_other_deg 1.502 r_mcangle_it 1.326 r_mcbond_it 1.184 r_symmetry_vdw_other 0.32 r_mcbond_other 0.277 r_nbd_refined 0.226 r_nbd_other 0.178 r_nbtor_refined 0.175 r_chiral_restr 0.165 r_xyhbond_nbd_refined 0.144 r_symmetry_vdw_refined 0.123 r_symmetry_hbond_refined 0.108 r_nbtor_other 0.089 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 876 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing