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CRYSTAL STRUCTURE OF A PROTEIN STRUCTURALLY SIMILAR TO SM/LSM-LIKE RNA-BINDING PROTEINS (JCVI_PEP_1096686650277) FROM UNCULTURED MARINE ORGANISM AT 2.60 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.3 277 NANODROP, 0.2M Ca Acetate, 20.0% PEG 3350, No Buffer pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.45 49.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.25 α = 90 b = 77.18 β = 113.82 c = 71.47 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-08-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.95373, 0.97957, 0.97942 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 27.057 95.7 0.047 9.46 16122 -3 58.562
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 92.4 0.404 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 27.057 16120 825 96.58 0.238 0.235 0.2472 0.285 0.285 RANDOM 32.898
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.3 4.18 -4.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.758 r_dihedral_angle_3_deg 16.684 r_dihedral_angle_4_deg 13.625 r_dihedral_angle_1_deg 6.42 r_scangle_it 3.747 r_scbond_it 2.381 r_angle_refined_deg 1.247 r_mcangle_it 1.027 r_angle_other_deg 0.871 r_mcbond_it 0.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.758 r_dihedral_angle_3_deg 16.684 r_dihedral_angle_4_deg 13.625 r_dihedral_angle_1_deg 6.42 r_scangle_it 3.747 r_scbond_it 2.381 r_angle_refined_deg 1.247 r_mcangle_it 1.027 r_angle_other_deg 0.871 r_mcbond_it 0.785 r_mcbond_other 0.268 r_symmetry_hbond_refined 0.242 r_symmetry_vdw_other 0.233 r_nbd_refined 0.198 r_nbd_other 0.192 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.162 r_symmetry_vdw_refined 0.125 r_nbtor_other 0.083 r_chiral_restr 0.072 r_bond_refined_d 0.013 r_bond_other_d 0.005 r_gen_planes_refined 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3024 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing