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Crystal Structure of the C2-GAP Fragment of synGAP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 4.9 298 80 mM ammonium sulfate, 11% PEG 3000, 0.1 M sodium phosphate/citrate, 0.1mM EDTA as additive, pH 4.9, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.83 56.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.32 α = 90 b = 113.32 β = 90 c = 166.09 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 19.97 99.6 0.067 22.52 32876 -3 57.974
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.17 100 0.383 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 19.97 32876 1644 100 0.246 0.244 0.2328 0.289 0.2795 RANDOM 39.426
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.51 1.26 2.51 -3.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.828 r_dihedral_angle_3_deg 20.715 r_dihedral_angle_4_deg 16.797 r_dihedral_angle_1_deg 6.532 r_scangle_it 2.415 r_angle_refined_deg 1.551 r_scbond_it 1.538 r_angle_other_deg 0.993 r_mcangle_it 0.918 r_mcbond_it 0.777
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.828 r_dihedral_angle_3_deg 20.715 r_dihedral_angle_4_deg 16.797 r_dihedral_angle_1_deg 6.532 r_scangle_it 2.415 r_angle_refined_deg 1.551 r_scbond_it 1.538 r_angle_other_deg 0.993 r_mcangle_it 0.918 r_mcbond_it 0.777 r_symmetry_vdw_other 0.278 r_nbd_refined 0.245 r_symmetry_hbond_refined 0.228 r_symmetry_vdw_refined 0.211 r_nbd_other 0.196 r_nbtor_refined 0.191 r_xyhbond_nbd_refined 0.15 r_mcbond_other 0.102 r_nbtor_other 0.094 r_chiral_restr 0.085 r_xyhbond_nbd_other 0.029 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5491 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling EPMR phasing REFMAC refinement PDB_EXTRACT data extraction