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Crystal structure of the leptospiral antigen Lp49
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 291 0.2 M LiSO4, 15 % PEG 4000, 0.1 M Tris-HCl, microseeding, pH 8.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.29 46.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.953 α = 90 b = 86.865 β = 90 c = 132.418 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 0.9795 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 53.45 96.3 0.116 19.3 11.8 60735 15.649
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.99 2.1 93.9 0.379 5.3 10.5 8497
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 20 57517 3078 96.07 0.18775 0.18511 0.187 0.2374 0.241 RANDOM 19.839
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.24 3.25 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.342 r_dihedral_angle_4_deg 16.696 r_dihedral_angle_3_deg 13.746 r_dihedral_angle_1_deg 6.608 r_scangle_it 2.356 r_scbond_it 1.564 r_angle_refined_deg 1.256 r_mcangle_it 1.126 r_mcbond_it 0.663 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.342 r_dihedral_angle_4_deg 16.696 r_dihedral_angle_3_deg 13.746 r_dihedral_angle_1_deg 6.608 r_scangle_it 2.356 r_scbond_it 1.564 r_angle_refined_deg 1.256 r_mcangle_it 1.126 r_mcbond_it 0.663 r_nbtor_refined 0.307 r_nbd_refined 0.189 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.14 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6438 Nucleic Acid Atoms Solvent Atoms 602 Heterogen Atoms 15
Software Software Software Name Purpose MAR345dtb data collection PHENIX model building REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing