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Crystal Structure of RebM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 MEPEG 5000, NH4SO4, Na Acetate, pH 5.0, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 51.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.153 α = 90 b = 119.153 β = 90 c = 84.412 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MARMOSAIC 225 mm CCD 2007-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.9804 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50 97.2 0.074 13.6 25.9 17746
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.74 81.3 0.382 14.5 1444
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.65 45.04 17714 901 97.26 0.217 0.214 0.2248 0.26 RANDOM 59.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.38 1.38 -2.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.293 r_dihedral_angle_3_deg 20.311 r_dihedral_angle_4_deg 19.836 r_dihedral_angle_1_deg 5.866 r_scangle_it 1.569 r_angle_refined_deg 1.33 r_scbond_it 0.978 r_mcangle_it 0.7 r_mcbond_it 0.405 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.293 r_dihedral_angle_3_deg 20.311 r_dihedral_angle_4_deg 19.836 r_dihedral_angle_1_deg 5.866 r_scangle_it 1.569 r_angle_refined_deg 1.33 r_scbond_it 0.978 r_mcangle_it 0.7 r_mcbond_it 0.405 r_nbtor_refined 0.302 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.219 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.094 r_bond_refined_d 0.011 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3709 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 52
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction