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Crystal Structure Analysis of AmFPI-1, fungal protease inhibitor from Antheraea mylitta
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 Ammonium sulfate, bis-Tris, PEG3350, pH6.5, vapor diffusion, hanging drop, temperature 298K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.42 49.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.58 α = 90 b = 60.58 β = 90 c = 85.065 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE mar345 dtb Osmic mirrors 2006-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 25 99.6 0.131 12.9 9.7 5816 10.435
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.4 96.8 0.523 2.3 6.9 544
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.1 24.94 3009 5531 266 99.49 0.25074 0.24874 0.2453 0.29306 0.2822 RANDOM 21.168
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.45 0.89 -1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.714 r_dihedral_angle_4_deg 18.504 r_dihedral_angle_3_deg 14.661 r_dihedral_angle_1_deg 6.072 r_scangle_it 2.569 r_scbond_it 1.634 r_mcangle_it 1.41 r_angle_refined_deg 1.401 r_mcbond_it 0.784 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.714 r_dihedral_angle_4_deg 18.504 r_dihedral_angle_3_deg 14.661 r_dihedral_angle_1_deg 6.072 r_scangle_it 2.569 r_scbond_it 1.634 r_mcangle_it 1.41 r_angle_refined_deg 1.401 r_mcbond_it 0.784 r_nbtor_refined 0.296 r_symmetry_vdw_refined 0.246 r_nbd_refined 0.216 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 627 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection SOLVE phasing