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Crystal Structure of Human Pumilio1 in Complex with CyclinB reverse RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M8Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 277 Hanging drop, pH 6.5, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.25 45.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.874 α = 90 b = 64.292 β = 90 c = 321.23 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm Mirror 2006-08-04 M SINGLE WAVELENGTH 2 1 100 CCD MAR CCD 165 mm Mirror 2006-12-08
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.979 APS 17-ID 2 SYNCHROTRON APS BEAMLINE 17-BM 0.918 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 92.3 0.071 20.3 6.4 30457 -3 19.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 67.5 0.22 4.72 6.3 1254
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1M8Y 2.8 25.87 17996 2352 86.3 0.244 0.244 0.2523 0.268 0.2756 RANDOM 45.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.32 18.28 -12.96
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.7 c_scangle_it 2.63 c_mcangle_it 2.07 c_scbond_it 1.63 c_angle_deg 1.6 c_improper_angle_d 1.3 c_mcbond_it 1.18 c_bond_d 0.012 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.7 c_scangle_it 2.63 c_mcangle_it 2.07 c_scbond_it 1.63 c_angle_deg 1.6 c_improper_angle_d 1.3 c_mcbond_it 1.18 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5491 Nucleic Acid Atoms 184 Solvent Atoms 145 Heterogen Atoms
Software Software Software Name Purpose CNS refinement MAR345 data collection DENZO data reduction SCALEPACK data scaling PHASER phasing