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Crystal structure of nitrilotriacetate monooxygenase component B from Bacillus cereus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294 2 M Ammonium sulfate, 0.1 M Cacodylate buffer, 0.2 M Sodium chloride, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.78 55.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.807 α = 90 b = 76.807 β = 90 c = 295.788 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 39.7 97.2 0.066 18.3 11.4 72506 72506 30.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.56 1.6 95.2 0.512 2.26 4.3 4984
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.56 39.7 72462 72462 3658 97.4 0.1549 0.1549 0.1533 0.1518 0.1866 0.1852 RANDOM 24.797
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.13 0.27 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.283 r_dihedral_angle_4_deg 15.274 r_dihedral_angle_3_deg 14.146 r_sphericity_free 6.281 r_dihedral_angle_1_deg 5.521 r_scangle_it 4.644 r_sphericity_bonded 4.364 r_scbond_it 4.23 r_rigid_bond_restr 4.088 r_mcangle_it 2.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.283 r_dihedral_angle_4_deg 15.274 r_dihedral_angle_3_deg 14.146 r_sphericity_free 6.281 r_dihedral_angle_1_deg 5.521 r_scangle_it 4.644 r_sphericity_bonded 4.364 r_scbond_it 4.23 r_rigid_bond_restr 4.088 r_mcangle_it 2.108 r_mcbond_it 1.415 r_angle_refined_deg 1.409 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.249 r_symmetry_hbond_refined 0.219 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.195 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3472 Nucleic Acid Atoms Solvent Atoms 522 Heterogen Atoms 9
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-2000 data reduction SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-2000 data scaling