☰ Navigation Tabs
Crystal structure of putative 7-cyano-7-deazaguanine reductase QueF from Vibrio cholerae O1 biovar eltor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 0.04M Sodium dihydrogen phosphate, 0.96M Di-potassium hydrogen phosphate, GTP, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.05 40.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.517 α = 119.25 b = 71.578 β = 110.18 c = 71.511 γ = 99.58
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 Mirrors 2007-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9793 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 50 94.1 0.069 7.5 4.5 149957 149957
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.58 76.5 0.359 2.4 3.9 12259
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.53 26.16 142270 142270 7527 93.89 0.145 0.145 0.143 0.183 0.1519 RANDOM 21.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 -0.18 -0.29 0.89 1.12 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.448 r_dihedral_angle_3_deg 13.391 r_dihedral_angle_4_deg 11.071 r_sphericity_free 6.274 r_dihedral_angle_1_deg 6.13 r_sphericity_bonded 4.446 r_scangle_it 4.393 r_scbond_it 3.208 r_mcangle_it 2.289 r_rigid_bond_restr 1.995
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.448 r_dihedral_angle_3_deg 13.391 r_dihedral_angle_4_deg 11.071 r_sphericity_free 6.274 r_dihedral_angle_1_deg 6.13 r_sphericity_bonded 4.446 r_scangle_it 4.393 r_scbond_it 3.208 r_mcangle_it 2.289 r_rigid_bond_restr 1.995 r_angle_refined_deg 1.578 r_mcbond_it 1.52 r_nbtor_refined 0.307 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.226 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.161 r_metal_ion_refined 0.124 r_chiral_restr 0.112 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8197 Nucleic Acid Atoms Solvent Atoms 1177 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELX phasing MLPHARE phasing RESOLVE phasing ARP/wARP model building