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Crystal structure of a putative sterol carrier protein type 2 (af1534) from archaeoglobus fulgidus dsm 4304 at 2.11 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 NANODROP, 20.0% PEG 1000, 0.1M Tris-HCl pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.11 41.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.25 α = 90 b = 105.21 β = 90 c = 85.72 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-10-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.91840, 0.97953, 0.97939 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 28.571 97.6 0.039 12.16 14873 -3 41.746
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 98.3 0.231 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.11 28.571 14854 757 98.53 0.198 0.196 0.1983 0.248 0.2487 RANDOM 31.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.35 2.99 -1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.376 r_dihedral_angle_3_deg 13.636 r_dihedral_angle_4_deg 11.925 r_scangle_it 6.769 r_scbond_it 5.406 r_dihedral_angle_1_deg 4.408 r_mcangle_it 3.263 r_mcbond_it 2.442 r_angle_refined_deg 1.584 r_angle_other_deg 0.902
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.376 r_dihedral_angle_3_deg 13.636 r_dihedral_angle_4_deg 11.925 r_scangle_it 6.769 r_scbond_it 5.406 r_dihedral_angle_1_deg 4.408 r_mcangle_it 3.263 r_mcbond_it 2.442 r_angle_refined_deg 1.584 r_angle_other_deg 0.902 r_mcbond_other 0.726 r_symmetry_hbond_refined 0.261 r_nbd_refined 0.217 r_symmetry_vdw_other 0.209 r_xyhbond_nbd_refined 0.196 r_symmetry_vdw_refined 0.196 r_nbtor_refined 0.192 r_nbd_other 0.185 r_chiral_restr 0.096 r_nbtor_other 0.092 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1747 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHARP phasing SHELXD phasing