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CRYSTAL STRUCTURE OF A DIMERIC FERREDOXIN-LIKE PROTEIN (CC_2267) FROM CAULOBACTER CRESCENTUS CB15 AT 1.64 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 NANODROP, 40.0% PEG 400, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.96 37.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.921 α = 90 b = 47.921 β = 90 c = 167.352 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-11-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97954, 0.97916 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 29.463 100 0.073 0.073 5.7 6.8 14906 25.76
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.68 100 1.096 1.096 0.7 7 1054
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.64 29.463 14825 750 99.99 0.2 0.199 0.2035 0.233 0.2355 RANDOM 20.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 0.41 0.83 -1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.013 r_dihedral_angle_4_deg 29.394 r_dihedral_angle_3_deg 14.551 r_dihedral_angle_1_deg 5.399 r_scangle_it 3.596 r_scbond_it 2.697 r_mcangle_it 1.781 r_angle_refined_deg 1.713 r_mcbond_it 1.354 r_angle_other_deg 0.985
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.013 r_dihedral_angle_4_deg 29.394 r_dihedral_angle_3_deg 14.551 r_dihedral_angle_1_deg 5.399 r_scangle_it 3.596 r_scbond_it 2.697 r_mcangle_it 1.781 r_angle_refined_deg 1.713 r_mcbond_it 1.354 r_angle_other_deg 0.985 r_mcbond_other 0.328 r_symmetry_vdw_other 0.303 r_nbd_refined 0.219 r_nbd_other 0.192 r_nbtor_refined 0.18 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.105 r_nbtor_other 0.088 r_bond_refined_d 0.018 r_bond_other_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 810 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHARP phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction