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The ribosomal protein S16 from Aquifex aeolicus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 20% PEG 2000 MME, 100mM Tris pH 6-7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.46 49.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.5 α = 90 b = 54.5 β = 90 c = 74.9 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97919 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 10 99.1 0.058 0.041 17.55 3.5 9015 9015 -3 -3 37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.8 0.25 0.197 5.71 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 8 8461 8461 445 100 0.24099 0.24099 0.23845 0.2357 0.28787 0.2866 RANDOM 37.438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.839 r_dihedral_angle_4_deg 20.25 r_dihedral_angle_3_deg 16.919 r_dihedral_angle_1_deg 6.805 r_scangle_it 2.882 r_scbond_it 1.948 r_mcangle_it 1.648 r_angle_refined_deg 1.45 r_mcbond_it 0.994 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.839 r_dihedral_angle_4_deg 20.25 r_dihedral_angle_3_deg 16.919 r_dihedral_angle_1_deg 6.805 r_scangle_it 2.882 r_scbond_it 1.948 r_mcangle_it 1.648 r_angle_refined_deg 1.45 r_mcbond_it 0.994 r_nbtor_refined 0.309 r_nbd_refined 0.213 r_symmetry_hbond_refined 0.167 r_symmetry_vdw_refined 0.162 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.115 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 792 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction CNS phasing