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Cyclodextrin glycosyl transferase from Thermoanerobacterium thermosulfurigenes EM1 mutant S77P
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A47 PDB ENTRY 1A47
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 20% Ammonium sulfate, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.625 α = 90 b = 96.016 β = 90 c = 114.159 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Toroidal mirror 2007-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 49 89.9 0.076 0.089 14.2 3.7 95798 95798 1 1 12.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 57.2 0.184 0.221 5.2 2.8 8663
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1A47 1.6 40.83 95798 95798 4793 89.36 0.14332 0.14225 0.1458 0.1633 0.1665 RANDOM 10.867
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.09 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.386 r_dihedral_angle_4_deg 10.974 r_dihedral_angle_3_deg 10.384 r_dihedral_angle_1_deg 5.892 r_scangle_it 1.473 r_angle_refined_deg 1.058 r_scbond_it 1.02 r_mcangle_it 0.633 r_mcbond_it 0.36 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.386 r_dihedral_angle_4_deg 10.974 r_dihedral_angle_3_deg 10.384 r_dihedral_angle_1_deg 5.892 r_scangle_it 1.473 r_angle_refined_deg 1.058 r_scbond_it 1.02 r_mcangle_it 0.633 r_mcbond_it 0.36 r_nbtor_refined 0.308 r_nbd_refined 0.185 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.13 r_xyhbond_nbd_refined 0.097 r_chiral_restr 0.073 r_metal_ion_refined 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5334 Nucleic Acid Atoms Solvent Atoms 1022 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling REFMAC phasing