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Crystal structure of a ntf2-like protein of unknown function (sbal_0622) from shewanella baltica os155 at 1.75 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 NANODROP, 20.0% 2-propanol, 20.0% PEG 4000, 0.1M Citric acid pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.085 α = 80.93 b = 58.121 β = 78.43 c = 140.462 γ = 60.6
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-09-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0000, 0.9796 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 29.348 81.7 0.042 0.042 11.9 1.9 126809
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 37.8 0.456 0.456 1.5 1.9 4345
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 29.348 126808 6400 81.57 0.154 0.152 0.1582 0.194 0.1971 RANDOM 16.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -0.23 -0.31 0.22 1.05 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.227 r_dihedral_angle_4_deg 15.974 r_dihedral_angle_3_deg 12.602 r_dihedral_angle_1_deg 6.463 r_scangle_it 5.753 r_scbond_it 4.304 r_mcangle_it 2.55 r_mcbond_it 1.946 r_angle_refined_deg 1.446 r_angle_other_deg 0.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.227 r_dihedral_angle_4_deg 15.974 r_dihedral_angle_3_deg 12.602 r_dihedral_angle_1_deg 6.463 r_scangle_it 5.753 r_scbond_it 4.304 r_mcangle_it 2.55 r_mcbond_it 1.946 r_angle_refined_deg 1.446 r_angle_other_deg 0.934 r_mcbond_other 0.667 r_symmetry_vdw_other 0.272 r_nbd_refined 0.207 r_nbd_other 0.2 r_nbtor_refined 0.177 r_symmetry_vdw_refined 0.156 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.092 r_nbtor_other 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11418 Nucleic Acid Atoms Solvent Atoms 1158 Heterogen Atoms 126
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction