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Crystal structure of acetyltransferase GNAT family (NP_981174.1) from Bacillus cereus ATCC 10987 at 1.31 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 NANODROP, 10.0% Glycerol, 35.0% MPD, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.22 44.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.37 α = 90 b = 89.553 β = 90 c = 37.228 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-10-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.91840, 0.97953, 0.97939 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.31 28.63 95.4 0.103 0.103 2.1 3.3 34064 12.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.31 1.34 71.7 0.375 0.375 1.9 2 1844
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.31 28.63 34028 1714 95.39 0.138 0.137 0.1463 0.173 0.1794 RANDOM 11.328
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.13 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.637 r_dihedral_angle_4_deg 19.863 r_dihedral_angle_3_deg 11.614 r_sphericity_free 8.766 r_dihedral_angle_1_deg 6.437 r_scangle_it 5.969 r_sphericity_bonded 4.656 r_scbond_it 4.612 r_mcangle_it 3.645 r_mcbond_it 2.764
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.637 r_dihedral_angle_4_deg 19.863 r_dihedral_angle_3_deg 11.614 r_sphericity_free 8.766 r_dihedral_angle_1_deg 6.437 r_scangle_it 5.969 r_sphericity_bonded 4.656 r_scbond_it 4.612 r_mcangle_it 3.645 r_mcbond_it 2.764 r_rigid_bond_restr 2.564 r_mcbond_other 1.878 r_angle_refined_deg 1.603 r_angle_other_deg 0.994 r_symmetry_vdw_other 0.255 r_nbd_refined 0.232 r_nbd_other 0.199 r_symmetry_hbond_refined 0.194 r_nbtor_refined 0.179 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.098 r_nbtor_other 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1117 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHARP phasing SHELXD phasing