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Crystal structure of anti-amyloid beta FAB WO2 (P21, FormB)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 100 mM MES, 25% (v/v) PEG 550 MME, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.404 α = 90 b = 111.164 β = 103.78 c = 53.09 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Si(111) Double Crystal Monochrometer. Adjustable focusing mirrors in K-B geometry 2007-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.97937 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 51.571 93.194 0.058 14.4 3 35794 33358
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 68.1 0.164 4.8 2 3538
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 51.57 35794 33358 1668 93.21 0.198 0.182 0.179 0.1873 0.236 0.1842 RANDOM 16.748
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.062 r_dihedral_angle_4_deg 22.362 r_dihedral_angle_3_deg 15.384 r_dihedral_angle_1_deg 7.162 r_scangle_it 4.312 r_scbond_it 2.916 r_mcangle_it 1.948 r_angle_refined_deg 1.68 r_mcbond_it 1.08 r_angle_other_deg 0.982
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.062 r_dihedral_angle_4_deg 22.362 r_dihedral_angle_3_deg 15.384 r_dihedral_angle_1_deg 7.162 r_scangle_it 4.312 r_scbond_it 2.916 r_mcangle_it 1.948 r_angle_refined_deg 1.68 r_mcbond_it 1.08 r_angle_other_deg 0.982 r_metal_ion_refined 0.648 r_symmetry_vdw_refined 0.443 r_symmetry_vdw_other 0.31 r_symmetry_metal_ion_refined 0.297 r_mcbond_other 0.276 r_symmetry_hbond_refined 0.217 r_nbd_other 0.21 r_nbd_refined 0.205 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.11 r_nbtor_other 0.09 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3414 Nucleic Acid Atoms Solvent Atoms 364 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection MOSFLM data reduction SCALA data scaling MOLREP phasing