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Crystal structure of human Feline Sarcoma Viral Oncogene Homologue (v-FES)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HYY An ensemble of three kinase domains from the PDB entries 2HYY, 2G2I, 2G2H experimental model PDB 2G2I An ensemble of three kinase domains from the PDB entries 2HYY, 2G2I, 2G2H experimental model PDB 2G2H An ensemble of three kinase domains from the PDB entries 2HYY, 2G2I, 2G2H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.2M Na2SO4, 0.1M Bis-Tris-Propane, 20% PEG 3350, 10% Ethylene glycol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.87 57.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.404 α = 90 b = 80.404 β = 90 c = 131.411 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.98074 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 43.81 100 0.128 0.128 18.7 14.1 46019 46019
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.88 100 0.787 0.787 2 5.9 6704
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT An ensemble of three kinase domains from the PDB entries 2HYY, 2G2I, 2G2H 1.78 43.81 45977 45977 2312 99.93 0.15 0.15 0.148 0.1549 0.189 0.1918 RANDOM 21.662
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.19 0.39 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.042 r_dihedral_angle_4_deg 12.284 r_dihedral_angle_3_deg 12.098 r_dihedral_angle_1_deg 5.941 r_mcbond_it 3.545 r_angle_refined_deg 1.532 r_angle_other_deg 1.118 r_mcbond_other 0.942 r_symmetry_vdw_other 0.265 r_nbd_refined 0.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.042 r_dihedral_angle_4_deg 12.284 r_dihedral_angle_3_deg 12.098 r_dihedral_angle_1_deg 5.941 r_mcbond_it 3.545 r_angle_refined_deg 1.532 r_angle_other_deg 1.118 r_mcbond_other 0.942 r_symmetry_vdw_other 0.265 r_nbd_refined 0.204 r_nbd_other 0.202 r_symmetry_hbond_refined 0.178 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.105 r_nbtor_other 0.085 r_symmetry_vdw_refined 0.078 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_mcangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2927 Nucleic Acid Atoms Solvent Atoms 388 Heterogen Atoms 82
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction