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Crystal structure of a member of enolase superfamily from Polaromonas sp. JS666
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 30% PEG 2000 MME, 150mM Potassium bromide pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.31 46.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 274.64 α = 90 b = 274.64 β = 90 c = 274.64 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm 2007-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9796 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.2 0.18 0.173 3.9 7.8 24915 -0.5 57.55
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 99.2 0.51 1.8 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 20 23986 795 99.85 0.20701 0.20519 0.2036 0.26337 0.2575 RANDOM 59.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.113 r_dihedral_angle_3_deg 18.973 r_dihedral_angle_4_deg 18.404 r_scangle_it 11.779 r_scbond_it 8.664 r_mcangle_it 5.666 r_dihedral_angle_1_deg 4.881 r_mcbond_it 3.857 r_angle_refined_deg 1.126 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.113 r_dihedral_angle_3_deg 18.973 r_dihedral_angle_4_deg 18.404 r_scangle_it 11.779 r_scbond_it 8.664 r_mcangle_it 5.666 r_dihedral_angle_1_deg 4.881 r_mcbond_it 3.857 r_angle_refined_deg 1.126 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.229 r_xyhbond_nbd_refined 0.151 r_nbd_refined 0.125 r_symmetry_vdw_refined 0.092 r_chiral_restr 0.082 r_metal_ion_refined 0.011 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5641 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 2
Software Software Software Name Purpose SHELX model building REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling SHELX phasing