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CRYSTAL STRUCTURE OF A PHAGE-RELATED PROTEIN (BB3626) FROM BORDETELLA BRONCHISEPTICA RB50 AT 2.05 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.79 277 NANODROP, 25.1% PEG 200, 5.0% PEG 3000, 0.1M MES pH 5.79, VAPOR DIFFUSION, SITTING DROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP 6 277 NANODROP, 30.0% PEG 200, 5.0% PEG 3000, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.39 α = 90 b = 188.32 β = 106.6 c = 105.15 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-10-25 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.91840 APS 23-ID-D 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97916, 0.91162 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.05 49.147 99.7 0.091 11.24 5.49 216795 -3 33.52
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.05 2.08 99.3 0.847 1.7 3.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 49.147 216789 3532 100 0.186 0.186 0.1905 0.227 0.2835 THIN SHELLS 43.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.64 0.1 -1.2 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.124 r_dihedral_angle_3_deg 12.783 r_dihedral_angle_4_deg 11.565 r_scangle_it 5.874 r_dihedral_angle_1_deg 4.751 r_scbond_it 4.244 r_mcangle_it 2.337 r_mcbond_it 1.491 r_angle_refined_deg 1.399 r_angle_other_deg 0.892
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.124 r_dihedral_angle_3_deg 12.783 r_dihedral_angle_4_deg 11.565 r_scangle_it 5.874 r_dihedral_angle_1_deg 4.751 r_scbond_it 4.244 r_mcangle_it 2.337 r_mcbond_it 1.491 r_angle_refined_deg 1.399 r_angle_other_deg 0.892 r_mcbond_other 0.417 r_symmetry_vdw_other 0.216 r_symmetry_hbond_refined 0.213 r_nbd_refined 0.204 r_nbd_other 0.193 r_nbtor_refined 0.178 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.157 r_nbtor_other 0.087 r_chiral_restr 0.08 r_xyhbond_nbd_other 0.073 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22752 Nucleic Acid Atoms Solvent Atoms 1336 Heterogen Atoms 262
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction MOSFLM data reduction SCALA data scaling SHARP phasing SHELXD phasing