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Crystal structure of putative 3-oxoacyl-(acyl-carrier-protein) synthase from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 291 0.2 M Magnesium chloride, 30% PEG 4000, 0.1 M Sodium cacodylate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.27 45.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.566 α = 90 b = 156.904 β = 90 c = 136.022 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2005-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9792 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 39.9 98.7 0.079 12.9 13.3 87637 87637 32.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 84.8 0.552 2.04 4.5 6183
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 39.9 87586 87586 2644 98.66 0.1625 0.1625 0.1612 0.1599 0.2033 0.2016 RANDOM 21.677
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.01 0.72 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.632 r_dihedral_angle_4_deg 16.928 r_dihedral_angle_3_deg 14.69 r_dihedral_angle_1_deg 4.658 r_scangle_it 3.559 r_scbond_it 2.371 r_angle_refined_deg 1.363 r_mcangle_it 1.339 r_mcbond_it 0.938 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.632 r_dihedral_angle_4_deg 16.928 r_dihedral_angle_3_deg 14.69 r_dihedral_angle_1_deg 4.658 r_scangle_it 3.559 r_scbond_it 2.371 r_angle_refined_deg 1.363 r_mcangle_it 1.339 r_mcbond_it 0.938 r_nbtor_refined 0.302 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.2 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.137 r_chiral_restr 0.103 r_metal_ion_refined 0.083 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7828 Nucleic Acid Atoms Solvent Atoms 938 Heterogen Atoms 31
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-2000 data reduction SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-2000 data scaling