☰ Navigation Tabs
met-Perch hemoglobin at pH 8.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OUU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 0.1 M Tris at pH 8.0 and 16.5% polyethylene glycol 4K, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.35 47.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.73 α = 90 b = 84.897 β = 90 c = 121.475 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MAR CCD 130 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 70 32953
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OUU 2.1 69.5 32953 1738 97.38 0.20666 0.20416 0.2023 0.25205 0.254 RANDOM 29.763
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.87 -1.01 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.42 r_dihedral_angle_3_deg 16.416 r_dihedral_angle_4_deg 13.791 r_dihedral_angle_1_deg 5.306 r_scangle_it 2.599 r_scbond_it 1.771 r_angle_refined_deg 1.347 r_mcangle_it 1.004 r_mcbond_it 0.612 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.42 r_dihedral_angle_3_deg 16.416 r_dihedral_angle_4_deg 13.791 r_dihedral_angle_1_deg 5.306 r_scangle_it 2.599 r_scbond_it 1.771 r_angle_refined_deg 1.347 r_mcangle_it 1.004 r_mcbond_it 0.612 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.255 r_symmetry_hbond_refined 0.238 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.089 r_metal_ion_refined 0.075 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4458 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 178
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing