☰ Navigation Tabs
CRYSTAL STRUCTURE OF A PUTATIVE TETR-FAMILY TRANSCRIPTIONAL REGULATOR (MLR_4833) FROM MESORHIZOBIUM LOTI MAFF303099 AT 1.54 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 NANODROP, 1.0M LiCl, 10.0% PEG 6000, 0.1M Citrate pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.62 52.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.534 α = 90 b = 64.221 β = 90 c = 142.613 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-10-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.91840, 0.97953 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 29.841 99.9 0.089 0.089 3.8 5 74962 18.884
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.58 100 0.546 0.546 1.4 3.7 5496
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.54 29.841 74864 3774 99.86 0.174 0.173 0.1794 0.194 0.2009 RANDOM 20.285
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.85 0.41 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.512 r_dihedral_angle_4_deg 12.722 r_dihedral_angle_3_deg 11.918 r_scangle_it 6.687 r_scbond_it 4.886 r_dihedral_angle_1_deg 3.307 r_mcangle_it 2.534 r_mcbond_it 2.179 r_angle_refined_deg 1.572 r_angle_other_deg 1.472
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.512 r_dihedral_angle_4_deg 12.722 r_dihedral_angle_3_deg 11.918 r_scangle_it 6.687 r_scbond_it 4.886 r_dihedral_angle_1_deg 3.307 r_mcangle_it 2.534 r_mcbond_it 2.179 r_angle_refined_deg 1.572 r_angle_other_deg 1.472 r_mcbond_other 0.437 r_nbd_refined 0.203 r_symmetry_vdw_other 0.169 r_nbtor_refined 0.167 r_nbd_other 0.143 r_symmetry_vdw_refined 0.135 r_xyhbond_nbd_refined 0.106 r_symmetry_hbond_refined 0.103 r_chiral_restr 0.102 r_nbtor_other 0.076 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.007 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3130 Nucleic Acid Atoms Solvent Atoms 435 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing