☰ Navigation Tabs
Crystal Structure of RTY Phosphopeptide Bound to Human Class I MHC HLA-A2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 21% PEG 3350, 0.1M sodium thiocyanate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.54 51.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.6 α = 90 b = 53.1 β = 104.8 c = 75.7 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SATURN 2007-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5417
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 92.6 0.044 28.53 7.5 46220 -3 25.511
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.8 64.4 0.49 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 19.62 46218 2303 92.92 0.199 0.198 0.2016 0.229 0.2327 RANDOM 18.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.04 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.513 r_dihedral_angle_4_deg 17.11 r_dihedral_angle_3_deg 13.476 r_dihedral_angle_1_deg 8.701 r_scangle_it 3.797 r_scbond_it 2.327 r_mcangle_it 1.444 r_angle_refined_deg 1.424 r_mcbond_it 0.765 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.513 r_dihedral_angle_4_deg 17.11 r_dihedral_angle_3_deg 13.476 r_dihedral_angle_1_deg 8.701 r_scangle_it 3.797 r_scbond_it 2.327 r_mcangle_it 1.444 r_angle_refined_deg 1.424 r_mcbond_it 0.765 r_nbtor_refined 0.294 r_nbd_refined 0.198 r_chiral_restr 0.134 r_xyhbond_nbd_refined 0.125 r_symmetry_vdw_refined 0.124 r_symmetry_hbond_refined 0.108 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3174 Nucleic Acid Atoms Solvent Atoms 328 Heterogen Atoms 9
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing