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The Structure Of A DnaB-Like Replicative Helicase And Its Interactions With Primase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 0.1 M Hepes (pH 7.5), 1 1.25 M MgAc, and 0.02 0.04% n-octylglucoside, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.25 62.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.634 α = 90 b = 184.411 β = 90 c = 184.47 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.9 40 98 0.084 0.095 23 6.9 35965 35317 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.9 4.04 92.1 0.0508 0.082 2.5 6.4 3242
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.91 38.81 33329 1750 97.45 0.33858 0.33801 0.3205 0.34889 0.3276 RANDOM 119.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.539 r_dihedral_angle_3_deg 14.164 r_dihedral_angle_4_deg 10.411 r_dihedral_angle_1_deg 3.224 r_mcangle_it 0.83 r_angle_refined_deg 0.61 r_mcbond_it 0.463 r_symmetry_hbond_refined 0.367 r_symmetry_vdw_refined 0.343 r_nbtor_refined 0.329
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.539 r_dihedral_angle_3_deg 14.164 r_dihedral_angle_4_deg 10.411 r_dihedral_angle_1_deg 3.224 r_mcangle_it 0.83 r_angle_refined_deg 0.61 r_mcbond_it 0.463 r_symmetry_hbond_refined 0.367 r_symmetry_vdw_refined 0.343 r_nbtor_refined 0.329 r_scangle_it 0.322 r_nbd_refined 0.256 r_xyhbond_nbd_refined 0.21 r_scbond_it 0.182 r_chiral_restr 0.044 r_bond_refined_d 0.005 r_gen_planes_refined 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19724 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing