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Crystal structure of a dimeric ferredoxin-like protein of unknown function (tfu_0763) from thermobifida fusca yx at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 NANODROP, 50.0% Ethylene glycol, 5.0% PEG 1000, 0.1M Sodium acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.22 44.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.07 α = 90 b = 35.27 β = 104.09 c = 76.63 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9537, 0.9798, 0.9797 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 27.206 91.4 0.044 11.24 35092 -3 21.273
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 61.1 0.397 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 27.206 35091 1762 94.9 0.199 0.197 0.203 0.237 0.2369 RANDOM 7.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 -0.6 -0.2 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.905 r_dihedral_angle_4_deg 14.898 r_dihedral_angle_3_deg 13.398 r_dihedral_angle_1_deg 11.611 r_scangle_it 5.568 r_scbond_it 4.488 r_mcangle_it 2.59 r_mcbond_it 1.798 r_angle_refined_deg 1.771 r_angle_other_deg 0.973
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.905 r_dihedral_angle_4_deg 14.898 r_dihedral_angle_3_deg 13.398 r_dihedral_angle_1_deg 11.611 r_scangle_it 5.568 r_scbond_it 4.488 r_mcangle_it 2.59 r_mcbond_it 1.798 r_angle_refined_deg 1.771 r_angle_other_deg 0.973 r_mcbond_other 0.529 r_symmetry_vdw_other 0.278 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.205 r_nbd_other 0.197 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.179 r_chiral_restr 0.111 r_nbtor_other 0.09 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1610 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing SHARP phasing