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The crystal structure of hypothetic protein SMU.573 from Streptococcus mutans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 289 0.49M sodium phosphate monobasic monohydrate, 0.91M Potassium phosphate dibasic, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.92 36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.527 α = 90 b = 96.527 β = 90 c = 56.26 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ mirrors 2007-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 2.2909
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 25 94 0.053 0.053 29.5 10.86 8542 39.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 69.7 0.078 0.078 20.4 6.5 629
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 20 10130 8521 413 93.98 0.21 0.208 0.2013 0.256 0.2459 RANDOM 20.225
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.99 -0.99 1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.091 r_dihedral_angle_4_deg 17.484 r_dihedral_angle_3_deg 15.459 r_dihedral_angle_1_deg 5.103 r_scangle_it 1.614 r_angle_refined_deg 1.07 r_scbond_it 1.017 r_mcangle_it 0.78 r_mcbond_it 0.415 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.091 r_dihedral_angle_4_deg 17.484 r_dihedral_angle_3_deg 15.459 r_dihedral_angle_1_deg 5.103 r_scangle_it 1.614 r_angle_refined_deg 1.07 r_scbond_it 1.017 r_mcangle_it 0.78 r_mcbond_it 0.415 r_nbtor_refined 0.297 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.158 r_metal_ion_refined 0.112 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2020 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling