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Crystal structure of Factor XIa in complex with Clavatadine A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.4 298 20mM Tris pH 7.4, 200mM NaCl, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.73 54.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.716 α = 90 b = 120.716 β = 90 c = 120.716 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 1 2006-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.976 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 34.86 99.9 0.082 0.082 4.9 5.8 36616 36616 20.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.69 100 0.44 0.44 1.9 6 5624
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 20 36616 1957 99.88 0.1792 0.17808 0.1819 0.19991 0.2029 RANDOM 23.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.744 r_dihedral_angle_4_deg 18.864 r_dihedral_angle_3_deg 11.651 r_dihedral_angle_1_deg 5.994 r_scangle_it 3.804 r_scbond_it 2.556 r_mcangle_it 1.845 r_angle_refined_deg 1.341 r_mcbond_it 1.235 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.744 r_dihedral_angle_4_deg 18.864 r_dihedral_angle_3_deg 11.651 r_dihedral_angle_1_deg 5.994 r_scangle_it 3.804 r_scbond_it 2.556 r_mcangle_it 1.845 r_angle_refined_deg 1.341 r_mcbond_it 1.235 r_nbtor_refined 0.312 r_xyhbond_nbd_refined 0.296 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.192 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1882 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling MOLREP phasing