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Crystal structure of SR protein kinase 1 complexed to its substrate ASF/SF2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 0.1M sodium citrate, 0.2M sodium acetate, 5% ethanol, 15% PEGMME 5000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.89 57.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.406 α = 90 b = 117.525 β = 90 c = 193.554 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2004-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.9793 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 93 0.058 19.9 4.4 13862 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.976 62.2 0.443 2.54 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 38.4 13153 707 92.68 0.24 0.237 0.2328 0.298 0.3034 RANDOM 114.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.41 -3.21 9.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.618 r_dihedral_angle_3_deg 22.165 r_dihedral_angle_4_deg 17.493 r_dihedral_angle_1_deg 6.887 r_scangle_it 1.696 r_angle_refined_deg 1.493 r_scbond_it 0.998 r_mcangle_it 0.752 r_mcbond_it 0.405 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.618 r_dihedral_angle_3_deg 22.165 r_dihedral_angle_4_deg 17.493 r_dihedral_angle_1_deg 6.887 r_scangle_it 1.696 r_angle_refined_deg 1.493 r_scbond_it 0.998 r_mcangle_it 0.752 r_mcbond_it 0.405 r_nbtor_refined 0.313 r_symmetry_hbond_refined 0.235 r_nbd_refined 0.232 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.105 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3400 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 46
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling