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Mannose/sorbose specific IIA subunit of phosphotransferase system from Enterococcus faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 0.2 M CALCIUM CHLORIDE, 0.1 M HEPES BUFFER, 30% PEG 4000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.13 42.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.059 α = 90 b = 37.503 β = 121.49 c = 76.993 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97920 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 37.5 79.6 0.117 35.3 7.3 36836 36836 20.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 31.8 0.351 3.18 4.3 973
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 37.5 34957 34957 1872 79.8 0.1593 0.1593 0.1573 0.1557 0.1967 0.1938 RANDOM 24.158
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.25 -1.24 3.39 -2.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.374 r_dihedral_angle_3_deg 14.699 r_dihedral_angle_4_deg 11.128 r_sphericity_free 6.648 r_dihedral_angle_1_deg 6.276 r_scangle_it 5.418 r_scbond_it 4.732 r_sphericity_bonded 4.28 r_rigid_bond_restr 4.065 r_mcangle_it 2.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.374 r_dihedral_angle_3_deg 14.699 r_dihedral_angle_4_deg 11.128 r_sphericity_free 6.648 r_dihedral_angle_1_deg 6.276 r_scangle_it 5.418 r_scbond_it 4.732 r_sphericity_bonded 4.28 r_rigid_bond_restr 4.065 r_mcangle_it 2.136 r_angle_refined_deg 1.805 r_mcbond_it 1.697 r_chiral_restr 0.332 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.272 r_nbd_refined 0.242 r_symmetry_hbond_refined 0.187 r_xyhbond_nbd_refined 0.184 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1876 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms
Software Software Software Name Purpose HKL-3000 phasing SHELXD phasing MLPHARE phasing DM model building SOLVE phasing RESOLVE model building REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling DM phasing RESOLVE phasing