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Structure of the nucleocapsid-binding domain from the mumps virus phosphoprotein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.7 277 0.2M Alanine/KOH pH 9.7, 3.6-4.6M Ammonium formate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.83 32.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.992 α = 90 b = 55.485 β = 90 c = 60.019 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-12-02 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2006-06-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.920 ALS 8.2.1 2 SYNCHROTRON SSRL BEAMLINE BL9-1 0.954,0.979 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 41.27 97.2 0.14 0.14 5.8 8.4 4915 4915 13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 98.6 0.343 2.4 8.7 484
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 40.74 4915 4677 238 97.14 0.19254 0.19254 0.18994 0.1898 0.2411 0.2437 RANDOM 10.779
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.32 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.559 r_dihedral_angle_4_deg 18.897 r_dihedral_angle_3_deg 18.515 r_dihedral_angle_1_deg 5.487 r_scangle_it 4.394 r_scbond_it 2.966 r_mcangle_it 1.954 r_angle_refined_deg 1.606 r_mcbond_it 1.362 r_nbtor_refined 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.559 r_dihedral_angle_4_deg 18.897 r_dihedral_angle_3_deg 18.515 r_dihedral_angle_1_deg 5.487 r_scangle_it 4.394 r_scbond_it 2.966 r_mcangle_it 1.954 r_angle_refined_deg 1.606 r_mcbond_it 1.362 r_nbtor_refined 0.29 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.209 r_symmetry_vdw_refined 0.2 r_symmetry_hbond_refined 0.109 r_chiral_restr 0.104 r_bond_refined_d 0.02 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 751 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling MLPHARE phasing