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crystal structure of the ErbB4 kinase in its inactive conformation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 2.2 M NaCl, 0.2 M MgCl2, 0.1 M hepes, pH 7.0, 2% hexafluoroisopropanol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.68 70.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.746 α = 90 b = 102.746 β = 90 c = 181.335 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm 2007-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CAMD BEAMLINE GCPCC CAMD GCPCC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4 30 98.6 0.253 4.2 7.5 9061
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 4 4.14 93.3 0.667 5.3 850
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4 30 9034 428 98.24 0.305 0.302 0.354 0.2229 RANDOM 63.658
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.46 -4.23 -8.46 12.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.893 r_dihedral_angle_3_deg 19.019 r_dihedral_angle_4_deg 15 r_dihedral_angle_1_deg 8.146 r_angle_refined_deg 1.639 r_scangle_it 0.827 r_mcangle_it 0.561 r_scbond_it 0.505 r_mcbond_it 0.32 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.893 r_dihedral_angle_3_deg 19.019 r_dihedral_angle_4_deg 15 r_dihedral_angle_1_deg 8.146 r_angle_refined_deg 1.639 r_scangle_it 0.827 r_mcangle_it 0.561 r_scbond_it 0.505 r_mcbond_it 0.32 r_nbtor_refined 0.316 r_symmetry_vdw_refined 0.307 r_nbd_refined 0.244 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.144 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4354 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling