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CRYSTAL STRUCTURE OF A DIMERIC FERREDOXIN-LIKE PROTEIN OF UNKNOWN FUNCTION (JANN_3925) FROM JANNASCHIA SP. CCS1 AT 2.30 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 NANODROP, 10.0% PEG 6000, 0.1M Citrate pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.24 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.721 α = 90 b = 66.323 β = 93.41 c = 110.452 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9537, 0.9795 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.841 99.9 0.122 0.122 5.4 3.7 47632 40.54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 100 0.907 0.907 0.8 3.7 3469
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 29.841 47622 2409 99.95 0.181 0.179 0.1813 0.222 0.223 RANDOM 32.854
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.39 0.56 -0.11 -2.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.582 r_dihedral_angle_4_deg 16.426 r_dihedral_angle_3_deg 14.513 r_scangle_it 7.062 r_dihedral_angle_1_deg 5.846 r_scbond_it 4.983 r_mcangle_it 2.75 r_mcbond_it 1.987 r_angle_refined_deg 1.566 r_angle_other_deg 0.969
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.582 r_dihedral_angle_4_deg 16.426 r_dihedral_angle_3_deg 14.513 r_scangle_it 7.062 r_dihedral_angle_1_deg 5.846 r_scbond_it 4.983 r_mcangle_it 2.75 r_mcbond_it 1.987 r_angle_refined_deg 1.566 r_angle_other_deg 0.969 r_mcbond_other 0.633 r_symmetry_vdw_other 0.319 r_symmetry_vdw_refined 0.206 r_nbd_refined 0.196 r_nbd_other 0.184 r_xyhbond_nbd_refined 0.179 r_nbtor_refined 0.173 r_symmetry_hbond_refined 0.144 r_nbtor_other 0.089 r_chiral_restr 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4756 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing