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Crystal structure of human GITRL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other humane GITRL from C2 spacegroup
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 2M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.3 46.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.943 α = 90 b = 141.943 β = 90 c = 47.211 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2006-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.3 0.081 0.081 97 8 17408 17286 5 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 99.7 0.608 0.608 4.2 7.4 1884
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT humane GITRL from C2 spacegroup 2.5 30 17408 17286 1067 95.75 0.22099 0.21747 0.212 0.2761 0.2697 RANDOM 38.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.04 0.08 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.106 r_dihedral_angle_3_deg 24.108 r_dihedral_angle_4_deg 23.208 r_dihedral_angle_1_deg 10.363 r_scangle_it 5.537 r_scbond_it 3.837 r_angle_refined_deg 2.964 r_mcangle_it 2.603 r_mcbond_it 1.655 r_nbtor_refined 0.348
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.106 r_dihedral_angle_3_deg 24.108 r_dihedral_angle_4_deg 23.208 r_dihedral_angle_1_deg 10.363 r_scangle_it 5.537 r_scbond_it 3.837 r_angle_refined_deg 2.964 r_mcangle_it 2.603 r_mcbond_it 1.655 r_nbtor_refined 0.348 r_symmetry_vdw_refined 0.334 r_nbd_refined 0.305 r_chiral_restr 0.234 r_xyhbond_nbd_refined 0.201 r_symmetry_hbond_refined 0.188 r_bond_refined_d 0.034 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3264 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement StructureStudio data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing