☰ Navigation Tabs
Fragment of WzzB, Polysaccharide Co-polymerase from Salmonella Typhimurium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 298 200mM MgCl, 100mM Nacacodylate pH 6.5, 20%PEG 8000, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.06 59.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.972 α = 90 b = 112.744 β = 97.34 c = 170.929 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97910 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 29.31 99.9 0.072 13.9 7.36 27458
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.31 100 0.334 4.5 7.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.1 29.24 26547 1416 100 0.25699 0.25462 0.2451 0.30149 0.2912 RANDOM 57.931
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.18 0.45 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.656 r_dihedral_angle_3_deg 18.334 r_dihedral_angle_4_deg 13.69 r_scangle_it 9.068 r_mcangle_it 6.678 r_scbond_it 5.492 r_mcbond_it 4.127 r_dihedral_angle_1_deg 4.06 r_angle_refined_deg 2.394 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.656 r_dihedral_angle_3_deg 18.334 r_dihedral_angle_4_deg 13.69 r_scangle_it 9.068 r_mcangle_it 6.678 r_scbond_it 5.492 r_mcbond_it 4.127 r_dihedral_angle_1_deg 4.06 r_angle_refined_deg 2.394 r_nbtor_refined 0.298 r_nbd_refined 0.172 r_chiral_restr 0.16 r_xyhbond_nbd_refined 0.16 r_symmetry_vdw_refined 0.07 r_bond_refined_d 0.021 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6778 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose d*TREK data scaling SHARP phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction