3B8O

Structure of WzzE- Bacterial Polysaccharide Co-polymerase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17298PEG 3350, pH 7.0, vapor diffusion, temperature 298K, pH 7.00
Crystal Properties
Matthews coefficientSolvent content
2.8256.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.438α = 90
b = 108.299β = 102.15
c = 122.569γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29ANSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.35096.80.0839.33.4117899
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3878.80.2972.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.447.89101074529099.060.225460.223330.26562RANDOM54.193
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.09-0.160.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.631
r_dihedral_angle_3_deg19.111
r_dihedral_angle_4_deg17.462
r_dihedral_angle_1_deg5.735
r_scangle_it4.459
r_scbond_it2.93
r_mcangle_it2.765
r_mcbond_it1.849
r_angle_refined_deg1.365
r_nbtor_refined0.295
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.631
r_dihedral_angle_3_deg19.111
r_dihedral_angle_4_deg17.462
r_dihedral_angle_1_deg5.735
r_scangle_it4.459
r_scbond_it2.93
r_mcangle_it2.765
r_mcbond_it1.849
r_angle_refined_deg1.365
r_nbtor_refined0.295
r_symmetry_hbond_refined0.264
r_symmetry_vdw_refined0.239
r_nbd_refined0.202
r_xyhbond_nbd_refined0.162
r_chiral_restr0.093
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14376
Nucleic Acid Atoms
Solvent Atoms395
Heterogen Atoms

Software

Software
Software NamePurpose
SCALEPACKdata scaling
SHARPphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction