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Crystal structure of the cytidine deaminase from Bacillus anthracis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 0.1M HEPES, 1.4M Tri-sodium citrate dihydrate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.46 49.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.078 α = 90 b = 98.479 β = 111.09 c = 61.36 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 57.26 96.24 0.092 22.2 4.8 47234 45458 2 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 83.56 0.683 1.43 3.7 3625
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 57.26 45458 45458 2417 96.24 0.16908 0.1676 0.1742 0.19589 0.2032 RANDOM 21.654
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 0.73 0.3 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.845 r_dihedral_angle_4_deg 16.478 r_dihedral_angle_3_deg 14.192 r_dihedral_angle_1_deg 6.253 r_scangle_it 3.536 r_scbond_it 2.502 r_mcangle_it 1.444 r_angle_refined_deg 1.364 r_mcbond_it 1.212 r_angle_other_deg 0.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.845 r_dihedral_angle_4_deg 16.478 r_dihedral_angle_3_deg 14.192 r_dihedral_angle_1_deg 6.253 r_scangle_it 3.536 r_scbond_it 2.502 r_mcangle_it 1.444 r_angle_refined_deg 1.364 r_mcbond_it 1.212 r_angle_other_deg 0.937 r_symmetry_vdw_refined 0.264 r_nbd_refined 0.226 r_mcbond_other 0.21 r_symmetry_vdw_other 0.208 r_nbd_other 0.2 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.174 r_symmetry_hbond_refined 0.131 r_nbtor_other 0.088 r_chiral_restr 0.084 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4565 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing