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Crystal structure of CysQ from Bacteroides thetaiotaomicron, a bacterial member of the inositol monophosphatase family
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 291 1.26M Ammonium sulfate, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.72 54.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.927 α = 90 b = 93.927 β = 90 c = 140.783 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-03-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97923, 0.97860 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.5 0.082 9.2 21 41147 41147 -3 23.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 99 0.57 0.378 20.3 2663
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 40.66 40803 40803 2061 99.55 0.167 0.167 0.166 0.1722 0.188 0.1921 RANDOM 20.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.21 -0.41 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.448 r_dihedral_angle_4_deg 14.351 r_dihedral_angle_3_deg 13.424 r_dihedral_angle_1_deg 9.361 r_scangle_it 3.61 r_scbond_it 2.761 r_mcangle_it 1.597 r_angle_refined_deg 1.47 r_mcbond_it 1.363 r_angle_other_deg 0.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.448 r_dihedral_angle_4_deg 14.351 r_dihedral_angle_3_deg 13.424 r_dihedral_angle_1_deg 9.361 r_scangle_it 3.61 r_scbond_it 2.761 r_mcangle_it 1.597 r_angle_refined_deg 1.47 r_mcbond_it 1.363 r_angle_other_deg 0.903 r_symmetry_vdw_other 0.288 r_symmetry_vdw_refined 0.258 r_mcbond_other 0.232 r_nbd_refined 0.222 r_nbd_other 0.197 r_symmetry_hbond_refined 0.192 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.172 r_xyhbond_nbd_other 0.138 r_chiral_restr 0.088 r_nbtor_other 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2114 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms 31
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building