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Crystal structure of predicted phosphate starvation-induced ATPase PhoH2 from Corynebacterium glutamicum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 1.26M Ammonium sulfate, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.24 44.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.668 α = 90 b = 98.668 β = 90 c = 36.675 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97924 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 93.9 0.098 7.6 5.4 15693 15693 -3 50.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.4 72.8 0.448 1.8 3.4 814
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.35 36.69 15625 15625 789 93.91 0.183 0.183 0.18 0.1905 0.234 0.2092 RANDOM 48.745
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.73 -0.86 -1.73 2.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.309 r_dihedral_angle_4_deg 21.27 r_dihedral_angle_3_deg 18.164 r_dihedral_angle_1_deg 6.301 r_scangle_it 3.42 r_scbond_it 2.406 r_angle_refined_deg 1.569 r_mcangle_it 1.503 r_mcbond_it 1.209 r_angle_other_deg 0.949
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.309 r_dihedral_angle_4_deg 21.27 r_dihedral_angle_3_deg 18.164 r_dihedral_angle_1_deg 6.301 r_scangle_it 3.42 r_scbond_it 2.406 r_angle_refined_deg 1.569 r_mcangle_it 1.503 r_mcbond_it 1.209 r_angle_other_deg 0.949 r_symmetry_vdw_other 0.251 r_nbd_other 0.203 r_nbd_refined 0.201 r_mcbond_other 0.175 r_nbtor_refined 0.171 r_symmetry_vdw_refined 0.164 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.147 r_nbtor_other 0.089 r_chiral_restr 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_xyhbond_nbd_other 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2884 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 45
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building