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Crystal structure of a putative glycosyl hydrolase with bnr repeats (reut_b4987) from ralstonia eutropha jmp134 at 2.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 NANODROP, 1.0M LiCl, 10.0% PEG 6000, 0.1M Tris-HCl pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.01 59.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.31 α = 90 b = 114.31 β = 90 c = 161.43 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double crystal Si(111) 2007-10-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9537, 0.9796, 0.9798 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 28.583 93 0.075 9.66 27218 -3 36.163
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 88.7 0.509 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 28.583 27210 1369 99.19 0.17 0.168 0.216 0.2087 RANDOM 26.687
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 0.54 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.274 r_dihedral_angle_4_deg 14.149 r_dihedral_angle_3_deg 12.475 r_scangle_it 6.101 r_scbond_it 4.819 r_dihedral_angle_1_deg 4.424 r_mcangle_it 2.912 r_mcbond_it 2.06 r_angle_refined_deg 1.859 r_angle_other_deg 1.402
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.274 r_dihedral_angle_4_deg 14.149 r_dihedral_angle_3_deg 12.475 r_scangle_it 6.101 r_scbond_it 4.819 r_dihedral_angle_1_deg 4.424 r_mcangle_it 2.912 r_mcbond_it 2.06 r_angle_refined_deg 1.859 r_angle_other_deg 1.402 r_mcbond_other 0.441 r_symmetry_vdw_other 0.22 r_xyhbond_nbd_refined 0.175 r_nbtor_refined 0.168 r_nbd_other 0.163 r_symmetry_hbond_refined 0.159 r_nbd_refined 0.155 r_symmetry_vdw_refined 0.122 r_chiral_restr 0.086 r_nbtor_other 0.084 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2850 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing SHARP phasing