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Complex of S52A Substituted Droposphila LUSH protein with Ethanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OOH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 295 25% PEG 4000, 100mM Sodium Acetate, 3:1 protein/well solution, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.15 42.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.873 α = 90 b = 46.873 β = 90 c = 111.206 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD NOIR-1 2004-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.12 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 35.76 98.9 0.07 8.4 3.35 25896
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 99.8 0.462 2.3 2.91
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1OOH 1.9 30 18492 1891 98.5 0.202 0.198 0.1968 0.236 0.2317 29.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.14 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.556 r_dihedral_angle_3_deg 14.991 r_dihedral_angle_4_deg 13.574 r_dihedral_angle_1_deg 4.709 r_scangle_it 3.791 r_scbond_it 2.67 r_mcangle_it 2.372 r_mcbond_it 1.618 r_angle_refined_deg 1.074 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.556 r_dihedral_angle_3_deg 14.991 r_dihedral_angle_4_deg 13.574 r_dihedral_angle_1_deg 4.709 r_scangle_it 3.791 r_scbond_it 2.67 r_mcangle_it 2.372 r_mcbond_it 1.618 r_angle_refined_deg 1.074 r_nbtor_refined 0.292 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.167 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.113 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2045 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 27
Software Software Software Name Purpose d*TREK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction